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SUMMARY:A new model for spheroid growth
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UID:indico-contribution-18-307@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Monika Szczepanek (Department of Medical Physics\, M
 . Smoluchowski Institute of Physics\, Faculty of Physics\, Astronomy and A
 pplied Computer Science\, Jagiellonian University\, Kraków\, Poland\, Tot
 al-Body Jagiellonian-PET Laboratory\, Jagiellonian University\, Poland)\nS
 pheroids are a model commonly used in research into new cancer treatments 
 and therapies. They mimic the structure\, microenvironment and cells signa
 ling present in solid tumors [1]. The following features can be recalled\,
  that makes spheroids a perfect model for investigations into cancer treat
 ment\, like their layered composition\, forced by the availability of nutr
 ients\, the growth kinetics and the expression pattern of some genes simil
 ar in spheroids and tumors [2\,3]. In particular\, three types of cells in
  the spheroid\, as well as in tumors\, can be distinguished\, which mainta
 in their layered architecture: dead cells inside the spheroid (necrotic zo
 ne)\; living\, non-proliferating cells in the middle (quiescent zone)\; an
 d living and proliferating cells in the outer layer of the spheroid [4\,5]
 . We propose a new spheroid growth model which reveals the growth dynamics
  of three spheroid zones. The model assumes different probabilities of the
  cell transition from proliferating to non-proliferating cells and from no
 n-proliferating to necrotic ones. This biological process goes only in one
  direction. We present a theoretical model based on simulations and experi
 mental data. By the presented model\, it is possible to assess proliferati
 ve and non proliferating cells\, which may be helpful in an experiment pla
 nning\, when particular fraction of proliferating cells are needed. In add
 ition\, the simulation data allow not only to confirm the prediction from 
 the model used\, but also to check how cells in a given state are distribu
 ted inside the spheroids. In particular\, the model allows an additional e
 stimation of the fraction of dead cells indirectly\, only from the growth 
 curve. Therefore\, the presented model can potentially provide more inform
 ation than the standard approach in such studies of the growth dynamics of
  tumors – the Gompertz curve.\n**References:**\n[1] A. S. Nunes et al.\,
  Biotechnol. Bioeng. 116\, (2019).\n[2] E.Ł. Stępień et al.\, Acta Phys
 . Pol. B 51\, (2020).\n[3] E. Axpe et al.\, PLoS One 9\, (2014).\n[4] M. S
 zczepanek\, Acta Phys. Pol. B 51\, (2020).\n[5] H. Karimi et al\, Micron 1
 37\, (2020).\n**Acknowledgments:**\nThis work was supported by the Foundat
 ion for Polish Science through the TEAM POIR.04.04.00-00-4204/17 Programme
  and the SciMat Priority Research Area budget under the Strategic Programm
 e Excellence Initiative at the Jagiellonian University through grant No. U
 1U/P05/NW/03.23.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributions
 /307/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/307/
END:VEVENT
BEGIN:VEVENT
SUMMARY:ATR-FTIR spectroscopy of extracellular vesicles derived from endot
 helial cells cultured in hyperglycemic conditions
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UID:indico-contribution-18-303@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Carina Rząca (Jagiellonian University)\ncarina.rzac
 a@doctoral.uj.edu.pl\n\nNowadays extracellular vesicles (EVs) are being ac
 tively researched. EVs are involved with several biological processes incl
 uding cell signalling\, transfer specific cargo (lipids\, proteins\, and n
 ucleic acids) and biomarkers of disease. EVs can be divided according to t
 heir size and way of arising into exosomes (diameter from 30 nm to 100 nm)
  and ectosomes (diameter from 100 nm to 1000 nm) [1\,2\,3].\n\nThe Attenua
 ted Total Reflectance Fourier Transform Infrared spectroscopy (ATR-FTIR) m
 ethod is based on the characteristic absorption of infrared radiation at s
 pecific wavelengths by functional groups like N–H\, C=O\, CH2\, CH3\, an
 d PO2. An IR spectrum carries specific information on the sample’s molec
 ular composition and structure [6\,7\,8]. The aim of this study is investi
 gation endothelial EVs cargo modifications in hyperglycemic conditions.\n\
 nIn this experiment we used cells\, exosomes and ectosomes derived from te
 lomerase-immortalized human microvascular endothelium cell line (TIME) cul
 tured in normoglycemic and hyperglycemic conditions. The parameters were d
 etermined to characterize the chemical state of the lipids and proteins of
  the EVs: saturated to unsaturated fat ratio\, acyl chain length\, protein
  phosphorylation and lipid to protein ratio [2\,6]. In addition\, the perc
 entage contribution of the following secondary protein structures was calc
 ulated based on the analysis of the second derivative of the spectra in th
 e Amide I band range: side chain\, inter β-sheet\, β-sheet\, random coil
 \, α-helix and β-turn [2].\n\nFTIR results showed that exosomes\, ectoso
 mes and cells differ in content of protein and lipid components. Moreover\
 , obtained results revealed differences in the molecular composition and s
 econdary structures of proteins from EV subpopulations derived from hyperg
 lycemic endothelial cells. Statistically significant differences were foun
 d between ectosomes from normoglycemia and hyperglycemia conditions for th
 e values of almost all calculated parameters. Summarizing\, ectosomes can 
 be considered as diabetes biomarkers. ATR-FTIR analyses may be useful in i
 dentifying new biomarkers of diabetes and its complications.\n\nReferences
 \n1.	Stępień EŁ et al. Arch. Med. Res. 2012\;43: 31-35.\n2.	Stępień E
 Ł et al. Biochem Biophys Rep. 2021\;25:100888.\n3.	Roman M et al. Nanomed
 icine. 2019\;17:137-149.\n4.	Stępień EŁ et. al. Theranostics. 2018\;8:3
 874-3890.\n5.	Alexandru N et al. Biochem Biophys Res Commun. 2016\;472:1-1
 0.\n6.	Ricciardi V et al. Appl. Sci. 2020\;10:2974.\n7.	Dogan A et al. Gen
 omics 2013\, 14:386\n8.	Kumar S et al. Chem. Soc. Rev.\, 2016\, 45\, 1879.
 \n\nAcknowledgments \nThis study was supported by the Polish NCN grant OPU
 S 17 to prof. E. Stępień (2019/33/B/NZ3/01004) and the SciMat Priority R
 esearch Area budget under the Strategic Programme Excellence Initiative at
  the UJ.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributions/303/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/303/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Assessment of the influence of the Beta parameter in the reconstru
 ction of Q.Clear.
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UID:indico-contribution-18-296@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Konrad Skórkiewicz (Jagiellonian Univeristy)\nMolec
 ular PET / CT imaging is used for the diagnosis of patients with neuroendo
 crine tumors with the use of radiolabelled somatostatin analogues. Iterati
 ve image reconstruction techniques are used to obtain the image.Unfortunat
 ely\, as a result of the significant impact of the so-called "Partial Volu
 me Effect" in minor changes in pathological radiopharmaceutical uptake\, t
 he results of the quantitative assessment are underestimated. In PET image
 s\, it affects the assessment of the diagnostic test results as a false ne
 gative result. The selection of appropriate Q.Clear reconstruction paramet
 ers in the PET / CT MI DR system can reduce the impact of this phenomenon.
  In order to perform the appropriate analysis\, measurements has been made
  using the NEMA IEC PET Body Phantom\, in which the hot spheres have been 
 filled concentration 10:1 of 68Ga isotope. The raw data was reconstructed 
 using a Q.Clear reconstruction for a Beta parameter in the range 150-1000\
 , in steps of 50. The analysis showed a clear decrease in the maximum valu
 es and mean SUVs with higher values of the Beta parameter for the smallest
  spheres.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributions/296/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/296/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Myocardial perfusion scintigraphy - criteria of SPECT/CT protocol 
 selection.
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UID:indico-contribution-18-297@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Adrian Kania-Kuc (Nuclear Medicine Unit\, Department
  of Endocrinology Department of Endocrinology\, Oncological Endocrinology 
 and Nuclear Medicine\, University Hospital\, Kraków\, Poland)\n**Key word
 s:**\nmyocardial perfusion\, nuclear medicine\, SPECT/CT\, image quality\n
 \n**Background:**\nMyocardial perfusion imaging with 99mTc-MIBI by SPECT/C
 T plays a major role in the diagnosis of coronary artery disease (CAD) as 
 a non-invasive test to assess perfusion in cardiomyocytes. The exam allows
  to assess the severity of the disease\, the effectiveness of the therapy\
 , and has a prognostic value. One disadvantage of this imaging method is t
 he relatively long SPECT acquisition time. The possible solution to this p
 roblem is shortening of  the examination time by improving the quality of 
 imaging and changing the acquisition parameters. The use of SPECT/CT with 
 cadmium-zinc telluride (CZT) technology may improve scanning parameters in
 cluding reduction of acquisition time\, however maintenance of high-qualit
 y imaging is required.\n\n**Aim:**\nThe aim of the study was to check the 
 possibility of implementation of a new myocardial perfusion imaging protoc
 ol with reduced acquisition time.\n\n**Material and methods:**\nWe compare
 d two protocols of myocardial perfusion SPECT/CT with 99mTc-sestamibi usin
 g different acquisition and reconstruction parameters. Two scans for one p
 atient was done firstly as an 8 minutes protocol\, the second was shortene
 d to 6 minutes. The acquisition was performed on a CZT camera one after th
 e other. Then CT scan for attenuation correction was performed according t
 o the standard SPECT/CT procedure. The analysis was performed on planar pe
 rfusion reconstruction of the SPECT myocardium. The volume of the greatest
  distribution of radionuclides in the heart was selected semi-automaticall
 y on the obtained coronary images. For both protocols\, three measurements
  were performed at the same locations and similar volumes in each measurem
 ent\, calculating the number of counts\, mean\, standard deviation (SD) an
 d volume. The measured volumes gradually increased in the measurements. Th
 e SD standardized to the volume of 1 ml was considered an important parame
 ter of the differentiation capacity of regions with a lower uptake of 99mT
 c-sestamibi in cardiomyocytes. All images were assessed by two nuclear med
 icine specialists in order to confirm the quality of the imaging.\n\n**Res
 ults:**\nPerformed examination of one patient with confirmed myocardial is
 chemia indicated a 10.48% decrease in SD/ml and 23.62% decrease in the num
 ber of counts of the measured volume. The amount of decrease in SD/ml sign
 ificantly reduced the possibility of diagnosis of small ischemia regions i
 n 6 minutes protocol in comparison with 8 minutes protocol.\n\n**Conclusio
 n:**\nOn the basis of comparative analysis performed by nuclear medicine s
 pecialists\, the 8-minute protocol was selected as the standard SPECT/CT m
 yocardial perfusion procedure due to better image quality and greater reso
 lution for small ischemic area of myocardium.\n\nhttps://indico.koza.if.uj
 .edu.pl/event/4/contributions/297/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/297/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Optimization and enhancement of CNR in MRI using core/shell contra
 st agent
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UID:indico-contribution-18-256@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: David MacDonald ()\nTitle:\nOptimization and enhance
 ment of CNR in MRI using core/shell contrast agent\n\nD. MacDonald [1]\, B
 . Blasiak [1] [2]\, B. Tomanek [1] [2] [3]\n\n\nPresenting author:\nDavid 
 MacDonald\ndmlmacdona@gmail.com\n\n\nMagnetic resonance imaging (MRI) prov
 ides the best soft contrast tissue among diagnostic imaging modalities suc
 h as CT\, PET or X-ray. The contrast provided by MRI is based on the proto
 n density and on interactions of protons with the surrounding molecules of
  tissues causing so called T_1 and T_2  relaxations. MRI techniques utiliz
 e these processes for contrast manipulation by producing T_1  or T_2  weig
 hted MR images. While MRI contrast may be provided solely by tissues thems
 elves due to differences in their relaxation times\, contrast agents short
 ening T_1  and T_2 further improve detection of small pathologies such as 
 early stages breast or brain cancers. Recently T_1/T_2 core shell contrast
  agents have been developed with an expectation that the contrast to noise
  ratio (CNR) would be greater than when compared to T_2  contrast agent. T
 o prove this\, firstly we calculated optimal parameters in commonly used S
 pin Echo and IR TrueFISP pulse sequences that provide the greatest CNR for
  known T_1 and T_2 relaxation times for an animal model of breast cancer. 
 The results show that the CNR of a tumor for a T_1/T_2  core shell contras
 t agent is greater than that of just a T_2  contrast agent for both the Sp
 in Echo and IR TrueFISP pulse sequences. To demonstrate the potential of o
 ur core/shell contrast agent in vivo MRI we imaged mice with breast tumors
  after intravenous injection of 0.25 mL of non-targeted core shell contras
 t agent NaDyF4 (20 nm)/NaGdF4 (~ 0.5 nm). Then to further increase the CNR
 \, we subtracted a T_1  weighted image with T_2  weighted image. Post-inje
 ction results show that the best CNR comes from the T_1 weighted image sub
 tracted by the T_2  weighted image\, and the CNR for the T_1 weighted imag
 e is greater than the CNR for the T_2 weighted image.\n\n[1] Instytut Fizy
 ki Jadrowej Polish Academy of Science\, Walerego Eljasza Radzikowskiego 15
 2\, 31-342 Kraków\, Poland\n[2] University of Alberta\, 116 St & 85 Ave\,
  Edmonton\, AB T6G 2R3\, Canada\n[3] University of Calgary\, 2500 Universi
 ty Dr NW\, Calgary\, AB T2N 1N4\, Canada\n\nhttps://indico.koza.if.uj.edu.
 pl/event/4/contributions/256/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/256/
END:VEVENT
BEGIN:VEVENT
SUMMARY:A simulation study to compare performance of analog and digital si
 licon photomultiplier tube by LTspice package
DTSTART;VALUE=DATE-TIME:20211010T130000Z
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-231@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Keyvan Tayefi Ardebili ()\nDetectors play a fundamen
 tal role in understanding physical phenomena and improved our understandin
 g. The rapid development in this area of science has been increased intere
 st to enhance the performance of detectors to achieve precise results. Pho
 tomultiplier tube (PMT) known as one of the main parts of the detectors wh
 ich are constructed in the shape of a vacuum tube and can detect light pho
 tons emitted by scintillators and amplify the intensity of light up to 100
  times. Alongside the advantages of PMT\, it has weaknesses such as being 
 sensitive to a magnetic field which prevents their use in magnetic resonan
 ce imaging (MRI)\, low gain\, and less coverage of scintillators. These we
 aknesses caused to development of an alternative type of element called si
 licon photomultipliers (SiPM). SiPMs are the latest generation of photomul
 tipliers\, which due to their low operating voltage\, are currently used b
 y many groups in a variety of fields\, including high-energy physics calor
 imetry\, solid-state physics\, and nuclear medicine. SiPMs consist of inde
 pendent pixels that are connected parallel to each other. It has a rectang
 ular sensitive cross-section where each pixel consists of a series connect
 ion of an avalanche photodiode (APD) in Geiger mode and a quenching resist
 or. Thanks to this geometrical design\, SiPM are able to provide larger se
 nsitive areas in comparison to PMTs. In this study\, we made a comparison 
 of analog and digital SiPM as the most popular and recent type of photomul
 tipliers via LTspice simulation package. The obtained results can provide 
 a general perspective for each type for further utilization.\nReferences:\
 n[1] S. Yamamoto\, et al.\, Med. Phys.\, vol. 39\, 2012\, pp. 6900-6907.\n
 [2] B.K. Lubsandorzhiev\, Nucl. Inst.  Meth. in Phys. Res. Sec. A\, vol. 5
 67\, 2006\, pp. 236-238\n[3] S. Gundacker\, A. Heering\, Phys. Med. Biol. 
 vol. 65\, 2020\, pp. 101-108. \n[4] F. Acerbia\, S. Gundacker\, Nucl. Inst
 .  Meth. in Phys. Res. Sec. A\, vol. 926\, 2006\, pp. 16-35.\n[5] I. Bokat
 i\, V. Korotaev\, et al.\, Phot. Mat. A\, vol. 11367\, 2020\, pp. 78-83. \
 n[6] P. Lecoq\, S. Gundacker\, Eue. Phys\, J\, vol. 136\, 2021\, pp. 213-2
 21.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributions/231/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/231/
END:VEVENT
BEGIN:VEVENT
SUMMARY:The Present and the future of Breast Cancer diagnosis
DTSTART;VALUE=DATE-TIME:20211010T141000Z
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-263@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Shivani . (Jagiellonian University)\nThe purpose of 
 the presented investigation is to compare the sensitivity\, specificity\, 
 PPV\, and NPV for standard mammography\, spectral mammography\, ultrasound
 \, and magnetic resource imaging (MRI)\, which are the commercially availa
 ble imaging modalities for breast cancer. The aim of our investigation is 
 to design\, construct and establish the performance characteristics of the
  Jagiellonian Positron Emission Mammography (J-PEM)\, for the detection an
 d diagnosis of cancer. Its construction is based on a novel idea of PET to
 mography based on plastic scintillators [1\,2] and wavelength shifters (WL
 S) [7\,8] and a new concept of positronium imaging [3\,4\,5]. This study c
 haracterizes the performance of a newly developed J-PEM scanner prototype.
  The prototype system consists of a single module of plastic scintillators
 \, built from two layers of the plastic scintillator (6x24x500 mm) and one
  layer of the wavelength shifters (3x10x100 mm) [6\,7] placed orthogonally
  between them. Each scintillator bar is attached at both ends to Silicon P
 hotomultipliers for the signal readout. This 3D system is based on the nov
 el idea of applying plastic scintillators to detect annihilation photons a
 nd improving spatial resolution by utilization of wavelength shifters (WLS
 ). J-PEM can be an effective system for the detection and diagnosis of bre
 ast cancer in its early stage by improving sensitivity and specificity and
  it can be achieved by the combined use of plastic scintillators\, which h
 ave superior timing properties\, with the WLS. In addition\, this device w
 ill be developed in view of the classification of malignancy based on the 
 possibility of positronium mean lifetime imaging.\n**References**: \n[1] P
 . Moskal\, Sz. Niedźwiecki\, et al.\, "Test of a single module of the J-P
 ET scanner based on plastic scintillators\," Nucl. Instr. Meth. A 764\, 31
 7 (2014).\n[2] P. Moskal\, O. Rundel\, et al.\, "Time resolution of the pl
 astic scintillator strips with matrix photomultiplier readout for J-PET to
 mograph\," Phys. Med. Biol. 61\, 2025 (2016).\n[3] P. Moskal\, D. Kisielew
 ska\, et al.\, "Feasibility study of the positronium imaging with the J-PE
 T tomograph\," Phys. Med. Biol. 64\, 055017 (2019).\n[4] P. Moskal\, B. Ja
 sińska\, et al.\, "Positronium in medicine and biology\," Nature Reviews 
 Physics 1\, 527-529 (2019).\n[5] P. Moskal\, D. Kisielewska\, et al.\, "Pe
 rformance assessment of the 2gamma positronium imaging with the total-body
  PET scanners\, "EJNMMI Physics. 7:44 (2020).\n[6] J. Smyrski\, P. Moskal\
 , et al.\, "Application of WLS strips for position determination in Strip 
 PET tomograph based on plastic scintillator\, "BioAlgorithms and Med-Syste
 ms 10\, 59 (2014).\n[7] J. Smyrski\, et al.\, "Measurement of gamma quantu
 m interaction point in plastic scintillator with WLS strips\," Nuclear Ins
 t. and Methods in Physics Research A 851\, 39-42\, (2017).\n\nhttps://indi
 co.koza.if.uj.edu.pl/event/4/contributions/263/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/263/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Classification of heavy metal contaminated samples based on micro-
 CT images using machine learning algorithms
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UID:indico-contribution-18-258@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Dominik Panek (M. Smoluchowski Institute of Physics\
 , Jagiellonian University)\nBeing able to predict whether a sample is cont
 aminated with any toxic substances or not is crucial\, especially when it 
 comes to health\, and this is where machine learning algorithms are essent
 ial [1-2]. In our research the emphasis was put on the ability to classify
  samples contaminated with two types of heavy metals: zinc (Zn)\, cadmium 
 (Cd)\, and the mixture of these two elements (Zn+Cd)\, based on the micro-
 computed tomography (micro-CT) images. Contaminated samples\, which were o
 perculum\, were coming from the Carassius Gibelio fish. Prior to the micro
 -CT scan fish were bred in the environment containing a concentration of 4
  mg/ml of water of each element. Additionally\, a control group\, with no 
 exposure to any heavy metal was cultured.\nAfter micro-CT scans\, images w
 ere reconstructed in order to get information\, which would help algorithm
 s learn about the dataset\, and finally\, which would be able to classify 
 samples into proper groups. The key features of the reconstructed images w
 ere: grayscale maximum value in a given group\, masses of the samples\, me
 an grayscale values\, and area under the grayscale histograms. \nApplied m
 achine learning models included: logistic regression\, SVM (Supporting Vec
 tor Machine)\, decision trees\, and KNN (K-nearest neighbors\, with differ
 ent numbers of neighbors k = 1\, 2\, 3\, …\, 10). Results left us no dou
 bt that most of the applied machine learning models are very good when it 
 comes to classification. The best results were achieved for the simplest l
 ogistic regression\, where the overall accuracy was 90%\, a second-best al
 gorithm was KNN with an accuracy of 71% for k = 1 and 86% for k = 4\, next
  were decision trees with an accuracy of 70% and SVM with an overall accur
 acy of 50%.\n\nReferences\n[1] Heavy metals in suspended matters during a 
 tidal cycle in the turbidity maximum around the Yangtze Estuary\, Huaijing
  Zhang et al.\, Acta Oceanologica Sinica 34\, 36–45(2015).\n[2] Toxicity
 \, mechanism and health effects of some heavy metals\, Monisha Jaishankar\
 , Interdiscip Toxicol. 2014 Jun\; 7(2): 60–72.\n\nhttps://indico.koza.if
 .uj.edu.pl/event/4/contributions/258/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/258/
END:VEVENT
BEGIN:VEVENT
SUMMARY:BSA as a biologically active nanocarriers – computational studie
 s
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DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-289@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Kamil Rakowski  (Jerzy Haber Instiute of Catalysis a
 nd Surface Chemistry Polish Academy of Sciences )\nHuman albumin (HSA) is 
 the main plasma protein that ensures the maintenance of proper osmotic blo
 od pressure and is also involved in the transport of metabolites to cells.
  It exhibits high solubility at pH = 7.4 and the ability to bind molecules
 \, making it possible to use it as a transporter of drugs such as 5-fluoro
 uracil (5-FU). 5-FU is a drug that causes the incorporation of fluoronucle
 otides in place of nucleotides that inhibit the thymidylate synthesis of t
 he nucleic acid enzyme. 5-Fluorouracil is used to treat a number of cancer
 s. The biggest problem is its susceptibility to dihydropyrimidine dehydrog
 enase (DPD)\, which metabolizes 5FU to the form of dihydrofluorouracil (DH
 FU) and destroys its therapeutic activity. The crystallographic model of b
 ovine albumin (BSA)\, which is an equivalent of human albumin (HSA)\, was 
 selected for the research. Before the docking process\, the model was prep
 ared in the Gromacs program. The object was simulated until the conformati
 onal changes stabilized\, which was monitored via the RMSD function. Final
 ly\, the thus obtained BSA model was used for interaction with 5-FU. Befor
 e the docking process\, the drug was prepared in the Avogadro program. Hyd
 rogens corresponding to a protonation state of pH = 7.4 were added to the 
 drug molecule and minimized in the MMFF94 field using a Conjugate Gradient
 . The standard protocol of random docking on the whole protein volume was 
 used\, the MGLTools tool was used\, docked using the rigid Autodock Vin me
 thods. The lowest energy complex was simulated with MD\, the drug-free con
 trol and the protein/ligand complex were simulated for another 100ns under
  the same conditions. In the conducted research\, the ligand was randomly 
 docked in the entire BSA volume. The results unique for the protein were v
 isualized\, and the complex with the most favorable energy was simulated u
 sing molecular dynamics methods. BSA has been shown to bind 5-FU at a simi
 lar position as HSA in the IB domain. Moreover\, it has been established b
 y computational methods that the binding of 5-FU at the center of the prot
 ein (IIIA and IIA domains) may be the most common and energetically most b
 eneficial for BSA. Docking at the center with the lowest Gibbs free energy
  was investigated in detail. Hydrophobic domains inside the ligand-binding
  pocket have been shown to influence the organization of solvent molecules
  and the formation of water clusters. The formed clusters constitute the m
 ain mechanism that stabilizes the drug inside the canal\, which may show p
 romise for its controlled release at elevated temperatures. During the sim
 ulation\, 5-FU moves into the cavity between domains IIIA and IIA. The bin
 ding of 5-FU may affect the mobility of adjacent BSA domains\, in particul
 ar the IB domain\, which is one of the most important pockets for binding 
 substances with therapeutic potential. The presence of the ligand between 
 domains IIIA and IIA resulting in the appearance of strong local chain flu
 ctuations (110-118AA\, IB domain).\n\nhttps://indico.koza.if.uj.edu.pl/eve
 nt/4/contributions/289/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/289/
END:VEVENT
BEGIN:VEVENT
SUMMARY:The development of a method for determining ortho-Positronium mean
  lifetime in extracellular vesicles using Positron Annihilation Lifetime S
 pectroscopy
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-285@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Julia Nizioł (Faculty of Physics\, Astronomy and Ap
 plied Computer Science\, Jagiellonian University\, Kraków\, Poland)\nPosi
 tron annihilation lifetime spectroscopy (PALS) has been used less extensiv
 ely in studies with biological material\, although its use in interrogatin
 g free volume\, voids and defects in polymers is well established. There e
 xist a number of results\, e. g. by E. Kubicz and the J-PET  group [1]\, s
 howing the correlation between cell structure and the PALS parameters\, su
 ch as mean ortho-Positronium (o-Ps) lifetime and intensity. This technique
  has also been demonstrated to have utility as an in situ molecular probe 
 in self-assembled biomimetic systems for which it is highly sensitive to c
 onformational\, structural and microenvironmental transformations [2]. \n\
 nExtracellular vesicles (EVs) are defined as bilayer cell membrane fragmen
 ts released into the extracellular space by various types of cells. EVs pl
 ay dual role throughout the body\, due to their involvement in both physio
 logical and pathological conditions [3]. Growing interest in these spheric
 al structures emerges from their involvement in cell-to-cell communication
 \, tumour progression and their possible application as biomarkers or drug
  delivery systems [4].   \n\nApplying PALS to study EVs required set-up mo
 difications (chamber design) and calibrations\, in order to adjust the sys
 tem for studies of liquid samples in temperature controlled conditions. Fo
 r that purpose\, the system was equipped with the Lauda LOOP L100 thermost
 at. Temperature of investigated samples was estimated from calibration dat
 a obtained through extensive thermal testing.\n Two EV samples derived fro
 m normal pancreatic beta-cell cultures suspended in PBS solution were exam
 ined: (1) from culture under normoglycemic and (2) hyperglycemic condition
 s. EV concentrations in the samples were determined using qNano technique 
 and its values were respectively: (1) $9\\times10^{10}$ and (2) $6\,9\\tim
 es10^{10}$ particles/mL. \n\n Preliminary results demonstrate strong corre
 lation between mean o-Ps lifetime and EV concentration in the sample. Stud
 ied concentrations of EVs were too low\, therefore it was mainly the PBS s
 olution that was contributing to the resulting o-Ps lifetime value\, and n
 ot the EVs itself. \n Obtained result opens perspective for further resear
 ch\, when applying higher EVs to PBS ratio. Such experiments were performe
 d e. g. by P. Sane et al. [5] and demonstrated that observing changes in o
 -Ps lifetime\, corresponding to phase transitions of membrane lipids in ve
 sicles (multilamellar DPPC)\, is feasible with PALS technique.\n\nReferenc
 es:\n[1] Kubicz\, E.\, Doctoral Thesis\, Jagiellonian University (2020).\n
 [2] Fong\, C. et al.\, Physical chemistry chemical physics : PCCP vol. 17\
 ,27: 17527-40 (2015).\n[3] Stępień\, E. et al.\, Expert opinion on thera
 peutic targets vol. 16\,7: 677-88 (2012).\n[4] Surman\, M. et al.\, Curren
 t pharmaceutical design vol. 25\,2: 132-154 (2019).\n[5] Sane\, P. et al.\
 , The journal of physical chemistry. B vol. 113\,7: 1810-2 (2009).\n\nhttp
 s://indico.koza.if.uj.edu.pl/event/4/contributions/285/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/285/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Simulations of absorption  in the brain of gamma quanta from posit
 ronium atoms
DTSTART;VALUE=DATE-TIME:20211010T141000Z
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UID:indico-contribution-18-284@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Agata Jędruszczak ()\nAgata Jędruszczak for the J-
 PET collaboration\nagatajedruszczak1999@gmail.com\nJagiellonian University
  in Kraków\; Faculty of Physics\, Astronomy and Applied Computer Science\
 , Profesora Stanisława Łojasiewicza 11\, 30-348 Kraków \n\nThe poster s
 hows the results of the research on the absorption in the brain of gamma q
 uanta from positronium atoms created during the PET imaging. \nPositronium
  imaging [1] is a new imaging method that allows to determine not only the
  location of the tumor\, but also the degree of its malignancy [2]. It is 
 the multi-photon imaging\, which uses not only 2𝜸\, but also 3𝜸 anni
 hilations. Amount of detected photons from decay into 2𝜸 or 3𝜸 give 
 information about tissue structure. Moreover\, the 3𝜸/2𝜸 ratio allow
 s the description of neoplastic changes [3]. The brain in these studies is
  approximated by a sphere with water. Monte Carlo simulations of positron 
 decays and photon absorption in the brain and skull were performed. The si
 mulation results were compared with theoretical calculations. The results 
 of the percent events for which none of photons scattered in the head are 
 as follows: 26.10 ± 0.05 % for para-positronium and 8.40 ± 0.03 % for or
 tho-positronium (absorption in the brain)\, 20.84 ± 0.05 % for para-posit
 ronium\, 5.46 ± 0.02 % for ortho-positronium (absorption in the brain and
  in skull). The values of the ratio from the simulation are: 0.322 ± 0.00
 2 for absorption in the brain and 0.262 ± 0.002 for absorption in the bra
 in and skull. The dependence of absorption probability of photons in the h
 ead on the location of positronium atom decay in the brain is determined. 
 \nThe poster will present the above-mentioned results and plots obtained i
 n the simulations. The methods by which the simulation results were obtain
 ed will also be presented.\nReferences\n[1] P. Moskal et al.\, "Positroniu
 m imaging with the novel multi-photon PET scanner"\, Science Advances (in 
 press) \n[2]  P. Moskal\, D.  Kisielewska\, C. Curceanu et al.\, "Feasibil
 ity study of the positronium imaging with the J-PET tomograph"\,Phys. Med.
  Biol. 64:055017 (2019)\n[3] B. Jasińska\, P. Moskal\, "A New PET Diagnos
 tic Indicator Based on the Ratio of 3𝜸/2𝜸 Positron Annihilation"\,Ac
 ta Phys. Pol. B\,48:1577-1582 (2017).\n\nhttps://indico.koza.if.uj.edu.pl/
 event/4/contributions/284/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/284/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Fast scanning of spent nuclear fuel dry storage casks using cosmic
  ray muons: Monte Carlo simulation study.
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-282@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Anzori Georgadze (Kiev Institute for Nuclear Researc
 h)\nStable development of fission-based nuclear energy facilities requires
  the safe management of spent nuclear fuel. The growing number spent nucle
 ar fuel in dry storage casks in intermediate storage sites around the worl
 d require efficient tools for non-destructive routine verifications of saf
 e storage of spent fuel assemblies. Using a cosmic ray muon for screening 
 of spent nuclear fuel in dry storage casks appears to be the most suitable
  solution for non-destructive verifications of fuel casks for safeguard pu
 rposes. Fast scanning of a fully or partially loaded dry storage casks is 
 evaluated using Monte - Carlo simulation with Geant4 package and muons pro
 duced using CRY event generator. The point of closest approach (POCA) algo
 rithms is used for reconstruction of muon interactions with dry storage ca
 sks. A Kolmogorov–Smirnov test was used to classify generated data sampl
 es for fully loaded casks and samples with one fuel assemble missing in dr
 y storage casks. We use the Receiver Operating Characteristic (ROC) techni
 que to characterize tradeoff between detection and false alarm rates. For 
 one-hour measurement time detection rate can be achieved ~96%. The develop
 ed method of statistical analysis of reconstructed POCA points allows dete
 cting dry storage casks with one fuel assemblies missing in a relatively s
 hort time of ~1 hour without full image reconstruction. The results of mod
 elling demonstrate that the scattered muon tomography allows to perform ef
 ficient non-destructive scanning of dry storage casks for nuclear nonproli
 feration purposes.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributio
 ns/282/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/282/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Physicochemical characteristic of poly(amidoamine) dendrimers are 
 their application in controlled drug delivery systems
DTSTART;VALUE=DATE-TIME:20211010T141000Z
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-280@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Magdalena Szota (Jerzy Haber Institute of Catalysis 
 and Surface Chemistry Polish Academy of Sciences)\nPoly(amidoamine) (PAMAM
 ) dendrimers are monodisperse synthetic polymers with nanosize ranging fro
 m 1-14nm. Dendrimer synthesis can be precisely controlled in size\, shape\
 , molecular mass\, composition\, and reactivity [1\,2]. The study's main a
 im was to investigate the correlation between the physicochemical properti
 es of the carrier and the active substance and the efficiency of the PAMAM
 -5FU complex formation. Experimental studies show that analysis of physico
 chemical properties of both PAMAM dendrimers and 5-fluorouracil play a sig
 nificant role in the formation of high-efficiency PAMAM-5FU complex. The l
 igand binding's effectiveness to the dendrimers’ structure is strictly d
 ependent on the complex formation conditions: molar ratio\, ionic strength
 \, pH\, and dendrimer generation. The fact that drug molecules bind most e
 ffectively under alkaline conditions when the dendrimer is close to the is
 oelectric point indicates the significant influence of the ligand charge\,
  which occurs in a deprotonated form. Studies have confirmed the system's 
 ability to attach approximately 20 5FU molecules per dendrimer molecule fo
 r the fourth generation dendrimer and about 25 molecules for the sixth gen
 eration dendrimer. Comparing these values with the nominal number of amine
  groups present in the dendrimer structure\, a system efficiency of 16% fo
 r G4PAMAM and 5% for G6PAMAM dendrimers was obtained.\nThe decrease in the
  zeta potential of the PAMAM-5FU systems compared to the dendrimer itself 
 indicates a change in the carrier's surface charge by drug immobilization.
  In addition\, it may reveal the presence of ligand molecules on the PAMAM
  surface. H1 NMR spectra indicate the presence of drug molecules both insi
 de the structure and on its surface. The research confirms the possibility
  of immobilizing the active agent in two ways and thus indicates the uniqu
 e properties of the structure of dendrimers.\nWe demonstrated that both G4
 PAMAM and G6PAMAM present no toxicity towards normal cells. Furthermore\, 
 the observed activity of 5-FU/PAMAM complexes in four cancer cell lines\, 
 resulting in decreasing of a fluorouracil IC50 dose by up to 30%. Consider
 ing that most of the traditionally administered 5-FU is decomposed to inac
 tive metabolites before reaching its target\, drug conjugation with dendri
 mers seems to be a promising approach that increases drug toxicity and sta
 bility\, ultimately leading to overcoming of transportation-related drug r
 esistance.\n\nAcknowledgments: This work was partially supported by projec
 t NCN OPUS 2016/23/B/02788\,\nReferences\n1. Jachimska B. Physicochemical 
 characterization of PAMAM dendrimer as a multifunctional nanocarriers\, Na
 noparticles in Pharmacotherapy. \; 2019. doi:10.1016/b978-0-12-816504-1.00
 003-\n2. Rae JM\, Jachimska B. Analysis of dendrimer-protein interactions 
 and their implications on potential applications of dendrimers in nanomedi
 cine. Nanoscale. 2021\;13(4):2703-2713. doi:10.1039/d0nr07607d\n\nhttps://
 indico.koza.if.uj.edu.pl/event/4/contributions/280/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/280/
END:VEVENT
BEGIN:VEVENT
SUMMARY:The use of x-ray volume imaging system for verification of the pos
 itioning accuracy during stereotactic radiotherapy of the head and lungs
DTSTART;VALUE=DATE-TIME:20211010T141000Z
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-277@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Katarzyna Matusiak (AGH University of Science and Te
 chnology\, Al. Mickiewicza 30\, 30-059 Krakow)\nThe aim of this study was 
 to analyzed the differences between the reconstruction of the patient's an
 atomy in the therapeutic area\, performed with the use of the X-ray Volume
  Imaging system (XVI) of the Elekta system\, and the actual patient positi
 oning. The results obtained from the cone beam tomography (CBCT) performed
  twice (before and after irradiation) were compared with the reference ima
 ges from computed tomography (CT) obtained during the treatment planning. 
 \n\nThe comparison was made for two groups: 20 patients irradiated in the 
 head area and 45 patients irradiated in the lung area. The results were an
 alyzed in three steps. The first was the analysis of data using the Studen
 t's t-test for one sample. It consisted in assessing whether the mean valu
 es of the isocenter shift implemented in relation to the isocentre planned
  in the direction of X\, Y\, Z for the studied patients are statistically 
 significantly different from 0. Then the data were analyzed using the Stud
 ent's t-test for paired samples. It was done to check whether the mean val
 ues of the isocenter shift realized in relation to the isocentre planned i
 n the X\, Y\, Z directions for the studied patients before irradiation are
  statistically significantly different from the mean values of the shift f
 or the studied patients after irradiation. The third stage of the analysis
  of the results originating from the XVI system was the calculation of pop
 ulation systematic and random errors in order to calculate the CTV-PTV mar
 gins according to the van Herk method. The practical part of this work was
  carried out in cooperation with the Department of Radiotherapy for Childr
 en and Adults of the University Children's Hospital in Krakow.\n\nAnalysis
  of obtained data confirmed the high precision of radiotherapeutics proced
 ures performed at the Department of Radiotherapy for Children and Adults\,
  University Children's Hospital in Krakow. Moreover\, the effectiveness of
  XVI system in set-up margins reduction was confirmed.\n\nhttps://indico.k
 oza.if.uj.edu.pl/event/4/contributions/277/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/277/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Free radicals influence on the positronium lifetime in melanocytes
  and melanomas cell cultures
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DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-269@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Ewelina Kubicz (Jagiellonian University)\nPositroniu
 m\, a bound state of positron and electron has been proposed as a novel bi
 omarker for examining cancer cells [1]. This atom is copiously created in 
 cells during Positron Emission Tomography (PET) imaging [2-3].Our pre-clin
 ical studies have shown significant differences in the lifetime of positro
 nium between normal and neoplastic cells and tissues [4-5]. Due to the con
 version process concentrations of free radicals\, especially reactive oxyg
 en species (ROS) have a significant influence on the properties of positro
 nium\, such as its lifetime and production intensity in the tissue [6-7]. 
 We investigated the role of antioxidants\, such as vitamin C and epigalloc
 atechin gallate (EGCG)\, on the values of the newly proposed biomarker. \n
 	Studies were conducted on in vitro cell culture of normal human cell: mel
 anocyte HEMa-LP cell line and two cell lines of melanoma: WM115 (primary m
 elanoma) and WM266-4 (metastatic melanoma) as an example of cancer cells w
 ith different degree of malignancy. Cells were exposed to vitamin C in var
 ious concentrations (100\, 1000 µM) and EGCG (10\, 100 µM). Positronium 
 lifetime was determined by means of Positron Annihilation Lifetime Spectro
 scopy and Na-22 isotope was used as a source of positrons. \n	Obtained res
 ults showed differences in positronium lifetime\, between normal and cance
 r cell in relation to their malignancy. Resulting o-Ps lifetime in HEMa-LP
 \, WM115\, and WM266-4 cells was equal to 1.91(02)ns\, 1.95(03)ns\, 1.99(0
 1)ns\, respectively in control\; 1.93(02)ns\, 1.96(01)ns\, 1.98(01)ns in 1
 000 µM concentration of vitamin C and 1.91(02)ns\, 1.93(01)ns\, 1.89(02)n
 s in 100µM concentration of EGCG. No significant differences were observe
 d in measured solutions without the cells\, resulting in o-Ps lifetime of 
 1.91(02)ns\, 1.88(01)ns in vit. C and EGCG solution\, respectively.\n	Outc
 ome of our experiment confirmed the validity of employing positronium as a
 n indicator\, which may have a direct impact on better and more accurate d
 iagnostics. The Jagiellonian Positron Emission Tomography scanner can be a
 pplied for simultaneous PET and positronium imaging [8-12].\n\nReferences:
 \n[1]  Moskal\, P. et al.\, Patent No: US 9851456\; PL 227658\; PCT/EP2014
 /068374.\n[2]  Moskal\, P.et al.\, Nat. Rev. Phys. 1\, 527–529 (2019).\n
 [3] Moskal\, P. 2019 IEEE Nucl. Scien. Sympo. and Medical Imaging Conferen
 ce Proceedings\, NSS/MIC 2019\, doi:10.1109/NSS/MIC42101.2019.9059856 (20
 20).\n[4] Moskal\, P. et al.\, Developing a Novel Positronium Biomarker fo
 r Cardiac Myxoma Imaging\, bioRxiv\n[5] Kubicz\, E. AIP Conf. Proc. 2182\,
  050004 (2019).\n[6] Stepanov\, P. S. et al.\,  Phys. Chem. Chem. Phys. 22
 \, 5123–5131 (2020).\n[7] Shibuya\, K. et al.  Commun. Phys. 3\, 173 (20
 20).\n[8] Moskal\, P. et al. Phys. Med. Biol. 61\, 2025–2047 (2016).\n[9
 ] Gajos\, A. et al. Adv. High Energy Phys. ID 8271280 (2018).\n[10] Moskal
 \, P. et al. Phys. Med. Biol. 64\, 055017 (2019).\n[11] Moskal\, P. et al.
  EJNMMI Phys. 7\, 44 (2020).\n[12] Moskal\, P. & Stępień\, E. PET Clin. 
 15\, 439–452 (2020).\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contrib
 utions/269/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/269/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Impact of PRRT with the use of 90Y/177LuDOTA-TATE to change of SUV
 s obtained in 68Ga-DOTA-TATE PET/CT in patients with neuroendocrine tumors
  – does the use of a theroanostic pair of radiopharmaceuticals may affec
 t the estimation of survival after PRRT?
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-271@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Marta Opalińska (University Hospital in Krakow)\nIm
 pact of PRRT with the use of 90Y/177LuDOTA-TATE to change of SUVs obtained
  in 68Ga-DOTA-TATE PET/CT in patients with neuroendocrine tumors – does 
 the use of a theroanostic pair of radiopharmaceuticals may affect the esti
 mation of survival after PRRT? \n\nIntroduction\nPeptide receptor radionuc
 lide therapy (PRRT) is an effective therapeutic option for metastatic neur
 oendocrine tumor (NET) therapy in case of good somatostatin receptor expre
 ssion in tumors tissue. Despite significant progress in management of NETs
 \, searching for novel predictive and prognostic factors is crucial. The h
 igh heterogeneity of the somatostatin receptors density in different NET m
 etastatic lesions and inside single tumours probably influence an clinical
  outcome. Some up-to-date studies indicate that the response to PRRT asses
 sed on the basis of imaging of somatostatin receptors may be a potentially
  useful tool for prediction of overall PRRT effect. \n\nAim\nAssessment of
  corrected SUV max change in metastatic NET lesions associated with PRRT c
 ounted in [68Ga]Ga-DOTA-TATE PET/CT and its potential impact on long-term 
 treatment outcomes. \n\nMaterials and Methods\nAmong all patients treated 
 with PRRT using 177Lu or 177Lu/90YDOTA-TATE in 2017-2019 due to disseminat
 ion of G1 and G2 classifications neuroendocrine neoplasm\, 13 patients who
  had 68Ga-DOTATATE PET/CT performed no longer than 6 months before and 6 m
 onths after PRRT. For all measurable metastatic lesions corrected SUVmax (
 taking into account individual for each patients SUV max of reference orga
 ns normal liver or spleen)\, mean value of SUV max in both PET/CTs (before
  and after PRRT) was calculated. Those results were correlated with clinic
 al outcome of the disease assessed during follow-up one on the basis of ot
 her imaging studies as positive (stabilization (SD) or regression (PR)) or
  negative (progression (PD).\n \nResults\nThe mean follow-up was 8.9months
 . PD was found in  patients\, PR or SD in 10 patients. Among patients with
  regression\, a decrease in the mean value of corrected SUVmax in comparis
 on to the baseline study of 277.12% was observed. Among patients with SD\,
  a mean of corrected SUVmax in comparison to the baseline study decreased 
 by 180.80%. Decrease in the mean value of corrected SUVmax in comparison t
 o the baseline study in patients with regression and stabilization taken t
 ogether was in average 209.85% Increased values were observed among progre
 ssive patients\, where change of corrected SUVmax was in average 6.11%. \n
 \nConclusion\nA decrease in the value of corrected SUVmax in metastatic le
 sions obtained from routine PET/CT tests with 68Ga-DOTA-TATE may indicate 
 a lower risk of neuroendocrine tumor progression within a 9 months from th
 e end of PRRT and may constitute an additional independent parameter helpi
 ng to estimate the risk of progression in this group of patients.\n\nhttps
 ://indico.koza.if.uj.edu.pl/event/4/contributions/271/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/271/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Cyclotron produced gallium-68 chloride [68Ga]GaCl3 as an alternati
 ve to 68Ge/68Ga generators
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-265@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Jakub Boratyński (Univeristy of Warsaw)\, Michał J
 agodziński (University of Warsaw)\n**Jakub Boratyński 1\,2\, Michał Jag
 odziński 1\,2 and Zbigniew Rogulski 2**\n\n*1 Centrum Produkcji Radiofarm
 aceutyków VOXEL S.A\, ul. Wrocławska 1-3\, 30-006 Kraków\,\n2 Wydział 
 Chemii\, Centrum Nauk Biologiczno-Chemicznych\, Uniwersytet Warszawski\, u
 l. Żwirki i Wigury 101\, 02-089 Warszawa*\n\n**E-mail: j.boratynski@voxel
 .pl**\n	\nThe 68Ga isotope is usually eluted from the 68Ge/68Ga generator 
 and is therefore readily available in PET (Nuclear Medicine) laboratories 
 which do not have a cyclotron in place. The characteristics of the 68Ga is
 otope that this possesses make it a desirable radionuclide for PET diagnos
 tics and the first widely available PET radioactive metal ion for routine 
 use worldwide. With the help of a chelator\, it can be easily attached to 
 a biologically active molecules\, which makes it suitable for conjugation 
 with various biomolecules using bifunctional chelators and various macromo
 lecules. Additionally\, the selection of the chelator enables one compound
  to be radiolabelled with different radiometals. Thanks to this\, it is po
 ssible to widely use (PET\, SPECT\, MRI\, multimodal PET/SPECT/CT and ther
 apy) of the compound only through the exchange of the radiometal with mini
 mal changes in biological behavior. This facilitates patient-centered care
 \, from diagnosis to molecular imaging to treatment\, e.g. possible combin
 ation with 177Lu or 90Y isotopes as a theranostic pair.\nDue to serious di
 sadvantages of 68Ge/68Ga generators\, such as a very high purchase cost\, 
 short expiry date of the generator\, low activity of the obtained isotope\
 , low availability on the market and the need to keep a break between succ
 essive elutions\, the number of PET studies with the use of 68Ga based rad
 iopharmaceuticals do not meet the market demand [1]\, hence recently attem
 pts have been made to obtain this valuable isotope using medical cyclotron
 s by irradiating of liquid (solution of 68Zn salts) [2] or solid target ma
 de of metallic 68Zn [3][4].\nThe paper presents the method of obtaining [6
 8Ga]GaCl3 via a solid target technology in a medical cyclotron at the VOXE
 L Radiopharmaceuticals Production Center in Kraków\, in quality compliant
  with the requirements of the European Pharmacopoeia and Good Manufacturin
 g Practice (GMP). This method leads to obtain much greater activities\, al
 lowing for the subsequent distribution of the 68Ga isotope. The above meth
 od may be an attractive alternative to 68Ge/68Ga generators and in the fut
 ure\, by increasing the availability of the 68Ga isotope\, may contribute 
 to changing the cancer diagnosis strategy.\n\n\n[1] K. Kumar\, Cancer Biot
 herapy And Radiopharmaceuticals\, 35\, 3 (2020).\n[2] F. Alves\, V.H.P. Al
 ves\, S.J. Do Carmo\, A.C. Neves\,M. Silva\, A.J. Abrunhosa\, Modern Physi
 cs Letters A\, 32\, 17\, (2017).\n[3] M. Lin\, G.J. Waligorski and C.G. Le
 pera\, Applied Radiation and Isotopes\, 133\, 1–3 (2018).\n[4] A.H. Alna
 hwi\, S. Tremblay\, S. Ait-Mohand\, J.F. Beaudoin\, B. Guéri\, Applied Ra
 diation and Isotopes\, 156\, 109014\, (2020).\n\nhttps://indico.koza.if.uj
 .edu.pl/event/4/contributions/265/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/265/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Spectrometric study of biomolecular differences of β-cell EVs sub
 populations from hyperglycemic conditions
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-261@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Magdalena Marzec (Jagiellonian University)\nExtracel
 lular vesicles (EVs) are a spherical shape structures surrounded by a prot
 ein-lipid membrane. EVs are important in the detection of various diseases
 \, such as cardiovascular disease or cancer\, and may have a high therapeu
 tic potential [1]. The molecular composition and size of EVs membranes var
 y depending on the source cells\, the current stage of development and env
 ironmental conditions. Their basic classification distinguishes three subp
 opulations: exosomes derived from endosomes (50–150 nm)\, microbubbles b
 udding in the cell membrane (100–1000 nm) and apoptotic bodies (100–50
 00 nm). Specific features of these EVs subgroups have been proposed\, but 
 there are still no standardized markers to distinguish these populations [
 2]. \nIn the work\, we propose the use of secondary ion mass spectrometry 
 with a time-of-flight analyzer (ToF-SIMS) to assess the differences in the
  molecular composition of EV subpopulations: exosomes\, ectosomes and a mi
 xture of both populations. EVs\, derived from pancreatic β-cells grown un
 der hyperglycemia conditions (HC)\, were purified by Low-Vacuum Filtration
  and concentrated by ultracentrifugation. ToF-SIMS\, as a highly sensitive
  qualitative technique\, made it possible to perform a comparative analysi
 s of the tested samples. During the analysis\, significant differences in 
 the intensities of the characteristic peaks of amino acids and individual 
 lipid groups were revealed. The demonstrated changes concern EV subpopulat
 ions and their mixture obtained from glycerin conditions. It can be assume
 d that various EV subpopulations derived from pancreatic β-cell cultures 
 are characterized by a changed molecular composition related to biogenesis
  of the discussed structures. The external environment has a significant i
 mpact on the protein-lipid EV membrane composition.\nKeywords: extracellul
 ar vesicles\; β-cell\; ToF-SIMS\; hyperglycemia\; lipidomic\;\n[1]	E. St
 ępień\, E. Stankiewicz\, J. Zalewski\, J. Godlewski\, K. Zmudka\, and I.
  Wybrańska\, “Number of microparticles generated during acute myocardia
 l infarction and stable  angina correlates with platelet activation.\,” 
 Arch. Med. Res.\, vol. 43\, no. 1\, pp. 31–35\, Jan. 2012\, doi: 10.1016
 /j.arcmed.2012.01.006.\n[2]	E. Ł. Stępień\, A. Kamińska\, M. Surman\, 
 D. Karbowska\, A. Wróbel\, and M. Przybyło\, “Fourier-Transform InfraR
 ed (FT-IR) spectroscopy to show alterations in molecular composition of EV
  subpopulations from melanoma cell lines in different malignancy\,” Bioc
 hemistry and biophysics reports\, vol. 25. Department of Medical Physics\,
  Marian Smoluchowski Institute of Physics\, Faculty of Physics\, Astronomy
  and Applied Computer Science\, Jagiellonian University\, 30-348\, Kraków
 \, Poland.\, p. 100888\, 2021\, doi: 10.1016/j.bbrep.2020.100888.\nThis wo
 rk was supported by the National Science Center (NCN)\, grant OPUS 17 to p
 rof. E. Stępień (No. 2019/33/B/NZ3/01004) and the SciMat Priority Resear
 ch Area budget under the Strategic Program Excellence Initiative at the Ja
 giellonian University.\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contrib
 utions/261/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/261/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Comparison of SP3 and S-Trap LC-MS/MS approaches in proteomic anal
 ysis of ectosomes derived from thyroid cancer and normal thyroid follicula
 r cells
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-257@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Magdalena Surman (Jagiellonian University in Krakow\
 , Faculty of Biology\, Institute of Zoology and Biomedical Research)\nThe 
 small size of ectosomes makes their isolation and obtaining the appropriat
 e protein yield for liquid chromatography-tandem mass spectrometry (LC-MS/
 MS) proteomic analyzes a considerable methodological challenge. Especially
  isolation of ectosomes from limited amount of body fluids of cancer patie
 nts means that a much smaller amount of protein is available for LC-MS/MS.
  The SP3 (solid-phase-enhanced sample preparation) method used by us so fa
 r [1] works when it is possible to obtain the appropriate amount of ectoso
 mal protein as a result of scaling cell cultures. The aim of this research
  was to develop a method of sample preparation for LC-MS/MS based of S-Tra
 p microcolumn technique that would give the same quality results despite u
 sing less protein.\n\nTwo cell lines were used in these research: anaplast
 ic thyroid carcinoma (8305C) and normal thyroid follicular (Nthy-ori 3-1) 
 cells. Ectosomes were isolated from conditioned media concentrated by low-
 vacuum filtration by differential centrifugation\, and prepared for LC-MS/
 MS using SP3 or S-Trap techniques. Then LC-MS/MS was used to analyze the p
 rotein content of the ectosome proteome. Next\, Gene Ontology (GO) analysi
 s was performed using UniProt Database to classify identified proteins acc
 ording to the biological processes\, molecular functions and their cellula
 r origin.\n\nUsing the SP3 method we identified 410 proteins in 8305C ecto
 somes and 558 proteins in Nthy-ori 3-1 ectosomes. S-Trap technique increas
 ed the numbers of identified proteins to 915 in 8305C ectosomes and to 804
  proteins in Nthy-ori  3-1 ectosomes. For 8305C and Nthy-ori 3-1 ectosomes
 \, 304 and 357 proteins were identified by both protocols \, respectively.
  Alongside the proteins identified regardless of chosen sample preparation
  method (SP3 or S-Trap) provided significant number of protein that were n
 ot identified by the other one. According to GO the most abundant groups o
 f proteins for both types of ectosomes were those connected with cytosolic
  or membrane origin. In 8305C ectosomes\, several cancer-associated protei
 ns were found\, which suggests their possible role in cancer promotion.\n\
 nAcknowledgements: The research was funded by the BioS Priority Research A
 rea under the program “Excellence Initiative –Research University” a
 t the Jagiellonian University in Krakow (U1U/P03/DO/13.17).\n\n[1] Surman 
 et al.\, \, Int J Mol Sci. 2020\, 21(8): 2934.\n\nhttps://indico.koza.if.u
 j.edu.pl/event/4/contributions/257/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/257/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Positronium biomarker in 3D melanoma spheroid model\, a novel prob
 e for cancer diagnosis
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-254@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Hanieh Karimi (Department of Medical Physics\, M. Sm
 oluchowski Institute of Physics\, Faculty of Physics\, Astronomy and Appli
 ed Computer Science\, Jagiellonian University\, Kraków\, Poland\, Total-B
 ody Jagiellonian-PET Laboratory\, Jagiellonian University\, Poland)\nSpher
 oids are three-dimensional cancer cell models able to mimic important prop
 erties of real tumors such as physical structure\, physiological character
 istics\, and gene expression patterns. In this research\, the lifetime of 
 Positronium has been evaluated in spheroids formed from human melanoma cel
 l lines\, WM266-4 and WM115. In the first step\, spheroids were formed fro
 m WM266-4 and WM115 melanoma cell lines\, using the hanging drop method an
 d the size\, rate of proliferation and viability of spheroids were evaluat
 ed precisely by optical\, fluorescent Microscopy and micro-CT [1]. \nAfter
  precise determination of spheroid characteristics\, we created spheroids 
 in 5D microplates for measuring positronium lifetime by PALS spectroscopy.
  The lifetime of positronium is environmentally dependent and it provides 
 information about the size of intra-molecular spaces in cells\, thus it is
  related to the tissue morpholo-gy. To determine the positronium lifetime\
 , the spheroids were inserted into an Aluminium chamber and irradi-ated wi
 th positrons emitted from 22Na radionuclide. The photons resulting from th
 e annihilation of positrons inside the spheroids were measured by the dedi
 cated detector build from BaF2 scintillators and digitizing acqui-sition s
 ystem. We observe differences in the lifetime of positronium depending on 
 the degree of malignancy of the melanoma cells. WM266-4 showed a higher ve
 locity in division than WM115 which got 1.5 and 2.74-fold more cells after
  the 4th and 8th day while WM115 demonstrated 1.4 and 1.7-fold more cells 
 after 4th and 8th days\, respectively. The Lifetime of o-Ps in WM266-4 sph
 eroids was 1.87 ns and 1.86 ns in 4th and 8th day after cul-turing while i
 n WM115 spheroids\, the o-Ps lifetime was 1.90 ns and 1.87 ns in 4th and 8
 th day\, respectively. In conclusion\, both cell lines showed a reduction 
 in an o-Ps lifetime during the time. This decrease in lifetime indicates t
 he reduction in molecular mobility because of the high concentration of ce
 lls in spheroids which are growing during the time. We can also consider t
 his difference in an o-Ps lifetime for malignancy diversity. The results w
 ill be reported in the context of its application of positronium as a biom
 arker for the in-vivo assess-ment of the degree of cancer malignancy with 
 the total-body PET scanners [2].\nKeywords: Spheroids\, melanoma\, Hypoxia
 \, Positron imaging\nAcknowledgments\nThis work was supported by the Found
 ation for Polish Science (FNP) through grant TEAM/2017-4/39 program\, and 
 DSC grant\, nom. N17/MNS/000023.\nReferences\n1. Karimi\, Hanieh\, et al. 
 "X-ray microtomography as a new approach for imaging and analysis of tumor
  spheroids." Micron 137 (2020): 102917.\n2. Moskal\, Paweł\, and Ł. Stę
 pień\, Ewa. "Prospects and clinical perspectives of total-body PET imagin
 g using plastic scintillators." PET clinics 15.4 (2020): 439-452.\n\nhttps
 ://indico.koza.if.uj.edu.pl/event/4/contributions/254/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/254/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Event Identification in Compton Camera Imaging via Machine Learnin
 g for Proton Therapy Monitoring
DTSTART;VALUE=DATE-TIME:20211010T141000Z
DTEND;VALUE=DATE-TIME:20211010T143000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-253@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Majid Kazemi Kozani (Marian Smoluchowski Institute o
 f Physics\, Jagiellonian University\, Kraków\, Poland)\nOne of the most i
 mportant challenges in hadron therapy is the development of online monitor
 ing techniques. Monitoring systems based on the detection of secondary rad
 iation such as prompt gamma (PG) emission produced during treatment are pr
 omising approaches for this purpose [1\,2]. The SiFi-CC\, a Compton camera
  based on stacks of heavy scintillating fibers and SiPMs\, is being develo
 ped for PG imaging [3\,4]. A machine learning approach based on TMVA [5] t
 o recognize Compton events is proposed for the classification of pseudo-da
 ta generated by the Geant4 simulation for a 180 MeV spot-scanning proton b
 eam impinging on a PMMA phantom. To reconstruct a Compton event\, a minimu
 m of two interactions is required. Therefore\, the proposed method first b
 uilds a learning set of the events filtered with interactions that yielded
  at least one interaction in each of two modules of the SiFi-CC. The data 
 set is used to train the boosted decision tree (BDT) model using nine feat
 ures including the position and deposited energy of interactions in the sc
 atterer and the absorber\, and the cosine of internal scattering angles te
 rm. A 10-fold cross-validation of the BDT model shows a great increase in 
 the signal to background ratio. A software based on the LM-MLEM algorithm 
 [6\,7] was applied for the reconstruction of the PG distribution. Very goo
 d agreement between the reconstructed distal edge position and that of sim
 ulated Compton events was obtained. Moreover\, it was shown that the preci
 sion of a few millimeters in distal edge position determination is feasibl
 e.\nReferences:\n[1] C.H. Min\, et al.\, Nucl. Instrum. Methods Phys. Res.
  A. vol. 580\, 2007\, pp. 562–565.\n[2] L. Kelleter\, et al.\, Phys. Med
 .\, vol. 34\, 2017\, pp. 7-17.\n[3] J. Kasper\, et al.\, Phys. Med.\, vol.
  76\, Jul. 2020\, pp. 317-325.\n[4] A. Wrońska\, et al.\, Acta. Phys. Pol
 . B\, vol. 51\, 2020\, pp. 17-25.\n[5] A. Hoecker\, et al.\, Rep. no. CERN
 -OPEN-2007-007.\n[6] S. J. Wilderman\, et al.\, IEEE Nucl. Sci. Symp. Med.
  Imaging Conf. Rec.\, vol. 3\, 1998\, pp. 1716-1720.\n[7] S. J. Wilderman\
 , et al.\, IEEE Trans. Nucl. Sci.\, vol. 48\, 2016\, pp. 111-116.\n\nhttps
 ://indico.koza.if.uj.edu.pl/event/4/contributions/253/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/253/
END:VEVENT
BEGIN:VEVENT
SUMMARY:The in vitro study of the toxicity and therapeutic effects of iron
  oxide nanoparticles with different core size
DTSTART;VALUE=DATE-TIME:20211010T140000Z
DTEND;VALUE=DATE-TIME:20211010T142000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-248@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Natalia Janik-Olchawa (Faculty of Physics and Applie
 d Computer Science\, AGH University of Science and Technology)\nNanotechno
 logy is a combination of science\, engineering and technology in a nanosca
 le. This revolutionary technics is used in many fields of science and life
  [1\,2]. Advances in nanotechnology resulted in the development of therano
 stic nanoparticles constituting the diagnostic and therapeutic agent in a 
 single particles [3]. Such features are possessed\, among others\, by magn
 etite nanoparticles which serving as the contrast agents for MRI can be us
 ed in medical diagnostics. In turn\, their interaction with the external m
 agnetic field cause that they can be used as drug carries or agents for th
 e local hyperthermia.\n   To introduce iron oxide nanoparticles (IONPs) in
 to clinical practice their biocompatibility and potential mechanisms of to
 xicity are to be determined. The main objective of our study was the analy
 sis of therapeutic potential and potential toxicities of IONPs based on di
 fferent cellular models. The impact of PEG-coated magnetite NPs with three
  different core diameters (5\, 10 and 30 nm)\, determined by TEM\, on the 
 normal and cancer cell lines was examined. The cytotoxicity of nanomateria
 ls was assessed by MTT assay and trypan blue staining. Cell motility\, int
 racellular ROS production and actin cytoskeleton rearrangements were also 
 studied. For this purpose\, fluorescence microscopy and time-lapse videomi
 croscopy were used. Moreover\, the anomalies in the distribution and struc
 ture of biomolecules induced in cells by IONPs were examined and for this 
 purpose Raman microspectroscopy was applied.\n   The obtained results show
 ed changes in cell life parameters which depended on the IONPs core diamet
 er\, cell line\, exposure time and dose. What is more\, the fluorescence m
 icroscopy with TIRF module showed changes in cytoskeleton organization and
  cell morphology for some cell lines after the treatment with IONPs.\n\nRe
 ferences:\n[1] Dadfar SM\, Roemhild K\, Drude NI\, von Stillfried S\, Knü
 chel R\, Kiessling F\, Lammers T. Iron oxide nanoparticles: Diagnostic\, t
 herapeutic and theranostic applications. Adv Drug Deliv Rev. 2019. 138:302
 -325.\n[2] Suciu M\, Ionescu CM\, Ciorita A\, Tripon SC\, Nica D\, Al-Sala
 mi H\, Barbu-Tudoran L. Applications of superparamagnetic iron oxide nanop
 articles in drug and therapeutic delivery\, and biotechnological advanceme
 nts. Beilstein J Nanotechnol. 2020. 11:1092-1109.\n[3] Revia RA\, Zhang M.
  Magnetite nanoparticles for cancer diagnosis\, treatment\, and treatment 
 monitoring: recent advances. Mater Today (Kidlington). 2016. 19(3):157-168
 .\n\nhttps://indico.koza.if.uj.edu.pl/event/4/contributions/248/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/248/
END:VEVENT
BEGIN:VEVENT
SUMMARY:Convolutional neural networks in classification of multi-photon co
 incidences in J-PET scanner
DTSTART;VALUE=DATE-TIME:20211010T134000Z
DTEND;VALUE=DATE-TIME:20211010T140000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-283@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Paweł Konieczka (NCBJ)\nPaweł Konieczka\, on behal
 f of the J-PET collaboration\n\nConvolutional Neural Networks are excellen
 t at analyzing images by\nlearning abstract representations. CNN has been 
 an overwhelming strategy\nin computer vision tasks and has achieved expert
 -level performances in\nvarious fields. There has been a surge of interest
  in the potential of\nCNN among radiology researchers and several studies 
 have already been\npublished in areas such as classification [1] and image
  reconstruction\n[2].\n\nFirst general methodology to transform a non-imag
 e data into an image\nfor CNN architectures has been presented in [3]. Nev
 ertheless\, this\nmethod cannot be applied to large data sets\, where numb
 er of features is\nvery small\, because of computational complexity of PCA
 . The introduction\nof scheme of non-image data transformation into 2-dime
 nsional matrices\nwill be proposed [4].\n\nThe goal of this poster is to p
 resent results of multi-photon\ncoincidences classification in J-PET scann
 er using CNNs. Bayesian\noptimization of two convolutional network archite
 ctures (DeepInsight\n[3]\, YOLOv1 [5]) will be presented.\n\nReferences:\n
 \n[1] Yasaka\, Koichiro\, et al. Deep learning with convolutional neural n
 etwork\nfor differentiation of liver masses at dynamic contrast-enhanced C
 T: a\npreliminary study. Radiology\, 2018\, 286.3: 887-896.\n\n[2] Liu\, F
 ang\, et al. Deep learning MR imaging--based attenuation correction\nfor P
 ET/MR imaging. Radiology\, 2018\, 286.2: 676-684.\n\n[3] Sharma\, Alok\, e
 t al. DeepInsight: A methodology to transform a non-image\ndata to an imag
 e for convolution neural network architecture. Scientific\nreports\, 2019\
 , 9.1: 1-7.\n\n[4] Raczyński\, Lech\, Introduction of non-image PET data 
 transformation to\nimage-form approach for classification using Convolutio
 nal Neural\nNetworks. 1st Symposium on Theranostics\, 2021.\n\n[5] Redmon\
 , Joseph\, et al. You only look once: Unified\, real-time object\ndetectio
 n. In: Proceedings of the IEEE conference on computer vision and\npattern 
 recognition. 2016. p. 779-788.\n\nE-mail: pawel.konieczka@ncbj.gov.pl\n\nh
 ttps://indico.koza.if.uj.edu.pl/event/4/contributions/283/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/283/
END:VEVENT
BEGIN:VEVENT
SUMMARY:CPT symmetry test in positronium annihilations with the J-PET dete
 ctor
DTSTART;VALUE=DATE-TIME:20211010T132000Z
DTEND;VALUE=DATE-TIME:20211010T134000Z
DTSTAMP;VALUE=DATE-TIME:20260815T031001Z
UID:indico-contribution-18-250@indico.koza.if.uj.edu.pl
DESCRIPTION:Speakers: Neha Chug (Jagiellonian University)\nDiscrete symmet
 ry under the combined transformation of charge\, parity\, and time reversa
 l (CPT) can be tested in the decays of positronium atom\, the lightest bou
 nd system built of charged leptons.\nJagiellonian Positron Emission Tomogr
 aph (J-PET) device constructed from plastic scintillators\, detects the ph
 otons originating from electron positron annihilation. This feature enable
 s J-PET to study CPT symmetry in the three photon annihilations of the tri
 plet state of positronium. Signs of violation of the CPT symmetry can be s
 ought as a non-vanishing expectation value of an angular correlation opera
 tor that is odd under CPT transformation.  Technique to estimate the spin 
 of ortho-positronium and momenta of annihilation photons for single record
 ed ortho-positronium event allows J-PET to measure the expectation value o
 f CPT symmetry odd angular correlation operator. J-PET measures a broad ra
 nge of kinematical configurations of ortho-positronium annihilation to thr
 ee photons and is the first experiment to determine the full range of the 
 CPT-odd angular correlation. The presentation will include the methods of 
 performing the CPT symmetry test using an angular correlation operator whi
 ch involves the spin and momenta of photons originating from o-Ps${\\to}3{
 \\gamma}$ decay using extensive size positronium production and annihilati
 on chambers with the J-PET detector.\n\nhttps://indico.koza.if.uj.edu.pl/e
 vent/4/contributions/250/
LOCATION:Theranostics Center / on-line
URL:https://indico.koza.if.uj.edu.pl/event/4/contributions/250/
END:VEVENT
END:VCALENDAR
